Lietuvos mokslų akademijos Leidybos skyrius
    Tel. +370 5 2626851, +370 5 2613620 El. paštas leidyba@lma.lt
Biologija / Biology

ISSN 1392-0146
ISSN 2029-0578 (online)

2006 m. Nr. 3

Identification and analysis of a novel serine β-lactamase-like plant protein by a bioinformatic approach
Julius Liobikas, Danas Baniulis, Vidmantas Stanys, Adolfas Toleikis, Ove Eriksson

We have searched through plant databases for nucleotide and protein sequences sharing a significant similarity to bacterial serine β-lactamases and metazoan LACTB. The search resulted in the identification of novel serine β-lactamase homologues in both Gymno- and Angiosperms. However, unlike bacterial β- lactamases and metazoan LACTB, plant homologues are dual domain proteins composed of an N-terminal ABC1 domain containing serine / threonine protein kinase motifs, followed by a C-terminal β-lactamase domain containing the active site motifs present in all serine β-lactamases. Multiple sequence alignments and secondary structure modelling of the β-lactamase domain revealed conserved regions that correspond to structural elements required for the serine protease active center formation. On the basis of sequence homology and secondary structure conservation, we propose that the chimeric plant protein is involved in apoptotic processes through its serine protease and serine /threonine protein kinase activity.

Keywords: serine β-lactamases, LACTB, ABC1, computational modelling, apoptosis

Issues:

2011 - Vol.57
No. 1, No. 2, No. 3

2010 - Vol.56
No. 1-4

2009 - Vol.55
No. 1-2, No. 3-4

2008 - Vol.54
No. 1, No. 2, No. 3, No. 4

2007 - Vol.53
No. 1, No. 2, No. 3, No. 4

2006
No. 1, No. 2, No. 3, No. 4

2005
No. 1, No. 2, No. 3, No. 4

2004
No. 1, No. 2, No. 3, No. 4

2003
No. 1, No. 2, No. 3, No. 4

2002
No. 1, No. 2, No. 3, No. 4

2001
No. 1, No. 2, No. 3, No. 4